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encyclopedia of Rare Disease Annotation for Precision Medicine



   stickler syndrome
  

Disease ID 953
Disease stickler syndrome
Definition
A rare autosomal dominant syndrome caused by mutations in the COL11A1, COL11A2, and COL2A1 genes which affect the production of type II and XI collagen. It is characterized by a range of signs and symptoms including cleft palate, large tongue, small lower jaw, hearing loss, myopia, glaucoma, retinal detachment, skeletal, and joint abnormalities.
Synonym
arthro-ophthalmopathy
stickler dysplasia
stickler syndrome (disorder)
stickler's syndrome
sticklers syndrome
wagner-stickler syndrome
Orphanet
DOID
UMLS
C0265253
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:3)
C0035305  |  retinal detachment  |  2
C0020302  |  congenital glaucoma  |  1
C0003864  |  arthritis  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:6)
1297  |  COL9A1  |  GHR;UNIPROT;UniProtKB-KW
1298  |  COL9A2  |  GHR
1280  |  COL2A1  |  CLINVAR;GHR;UNIPROT
1302  |  COL11A2  |  GHR;UNIPROT
84695  |  LOXL3  |  UniProtKB-KW
1301  |  COL11A1  |  GHR;UNIPROT
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:25)
24  |  ABCA4  |  1.104  |  DISEASES
7439  |  BEST1  |  1.365  |  DISEASES
1260  |  CNGA2  |  3.258  |  DISEASES
1272  |  CNTN1  |  2.289  |  DISEASES
6900  |  CNTN2  |  1.608  |  DISEASES
1301  |  COL11A1  |  7.18  |  DISEASES
1302  |  COL11A2  |  6.959  |  DISEASES
1280  |  COL2A1  |  7.511  |  DISEASES
1290  |  COL5A2  |  2.294  |  DISEASES
1297  |  COL9A1  |  5.451  |  DISEASES
1298  |  COL9A2  |  4.641  |  DISEASES
1299  |  COL9A3  |  3.479  |  DISEASES
8322  |  FZD4  |  2.71  |  DISEASES
340784  |  HMX3  |  3.981  |  DISEASES
4897  |  NRCAM  |  1.96  |  DISEASES
8481  |  OFD1  |  2.332  |  DISEASES
26121  |  PRPF31  |  2.153  |  DISEASES
7955  |  RNF217-AS1  |  3.099  |  DISEASES
6103  |  RPGR  |  1.566  |  DISEASES
6197  |  RPS6KA3  |  1.581  |  DISEASES
4070  |  TACSTD2  |  1.648  |  DISEASES
50945  |  TBX22  |  2.174  |  DISEASES
6949  |  TCOF1  |  1.925  |  DISEASES
7045  |  TGFBI  |  1.271  |  DISEASES
157680  |  VPS13B  |  1.793  |  DISEASES
Locus(Waiting for update.)
Disease ID 953
Disease stickler syndrome
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:67)
HP:0004327  |  Abnormality of the vitreous humor
HP:0000520  |  Proptosis
HP:0011800  |  Midface retrusion
HP:0000518  |  Cataract
HP:0000682  |  Abnormality of dental enamel
HP:0003196  |  Short nose
HP:0002653  |  Bone pain
HP:0000541  |  Retinal detachment
HP:0000545  |  Myopia
HP:0004322  |  Short stature
HP:0000365  |  Hearing impairment
HP:0001166  |  Arachnodactyly
HP:0001519  |  Disproportionate tall stature
HP:0001533  |  Slender build
HP:0005930  |  Abnormality of epiphysis morphology
HP:0001373  |  Joint dislocation
HP:0005280  |  Depressed nasal bridge
HP:0006288  |  Advanced eruption of teeth
HP:0002205  |  Recurrent respiratory infections
HP:0002829  |  Arthralgia
HP:0000347  |  Micrognathia
HP:0000618  |  Blindness
HP:0000506  |  Telecanthus
HP:0002652  |  Skeletal dysplasia
HP:0000486  |  Strabismus
HP:0005692  |  Joint hyperflexibility
HP:0000316  |  Hypertelorism
HP:0000158  |  Macroglossia
HP:0000204  |  Cleft upper lip
HP:0000343  |  Long philtrum
HP:0009804  |  Reduced number of teeth
HP:0000407  |  Sensorineural hearing impairment
HP:0004374  |  Hemiplegia/hemiparesis
HP:0003202  |  Skeletal muscle atrophy
HP:0008872  |  Feeding difficulties in infancy
HP:0002020  |  Gastroesophageal reflux
HP:0000286  |  Epicanthus
HP:0000175  |  Cleft palate
HP:0003312  |  Abnormal form of the vertebral bodies
HP:0000457  |  Depressed nasal ridge
HP:0000554  |  Uveitis
HP:0000327  |  Hypoplasia of the maxilla
HP:0002650  |  Scoliosis
HP:0011675  |  Arrhythmia
HP:0000162  |  Glossoptosis
HP:0000389  |  Chronic otitis media
HP:0003179  |  Protrusio acetabuli
HP:0000483  |  Astigmatism
HP:0002758  |  Osteoarthritis
HP:0002808  |  Kyphosis
HP:0010290  |  Short hard palate
HP:0000272  |  Malar flattening
HP:0000926  |  Platyspondyly
HP:0002857  |  Genu valgum
HP:0003416  |  Spinal canal stenosis
HP:0004326  |  Cachexia
HP:0001083  |  Ectopia lentis
HP:0001634  |  Mitral valve prolapse
HP:0000505  |  Visual impairment
HP:0010807  |  Open bite
HP:0000463  |  Anteverted nares
HP:0002827  |  Hip dislocation
HP:0001252  |  Muscular hypotonia
HP:0004349  |  Reduced bone mineral density
HP:0000501  |  Glaucoma
HP:0000768  |  Pectus carinatum
HP:0000940  |  Abnormal diaphysis morphology
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:6)
Disease ID 953
Disease stickler syndrome
Manually Symptom(Waiting for update.)
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Manually Genotypes:1)
Gene Mutation DOI Article Title
COL2A1chr12:g.48369769G>A, heterozygous;NM_001844.4, NP_001835.3;c.3574C>T, p.(Arg1192*)doi:10.1038/gim.2016.1A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:2)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs672601354NA1280COL2A1umls:C0265253CLINVARNA0.132486326NACOL2A11247976889-AG
rs672601355NA1280COL2A1umls:C0265253CLINVARNA0.132486326NACOL2A11247987632-GACCCAGGA
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:25)
HP ID HP Name MP ID MP Name Annotation
HP:0004327Abnormality of the vitreous humorMP:0012129failure of blastocyst formationinability to form a blastocyst from a solid ball of cells known as a morula
HP:0008872Feeding difficulties in infancyMP:0011075abnormal macrophage activation involved in immune responseanomaly in the process in which a change in response and behavior of a macrophage results from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response
HP:0000457Depressed nasal ridgeMP:0004872absent nasal septumabsence of the structure that separates the two nasal cavities
HP:0005930Abnormality of epiphysis morphologyMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0003196Short noseMP:0002233abnormal nose morphologyany structural anomaly of the organ that is specialized for smell and is part of the respiratory system
HP:0000541Retinal detachmentMP:0003099retinal detachmentdetachment of the retina from the underlying inner wall of the eye, often from tension of the vitreous; may occur with aging or as a result of trauma
HP:0001083Ectopia lentisMP:0005263ectopia lentiscongenital displacement of the lens due to defective zonule formation
HP:0005280Depressed nasal bridgeMP:0013582abnormal lateral nasal gland morphologyany structural anomaly of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those d
HP:0010290Short hard palateMP:0009890cleft secondary palatecongenital fissure of the tissues normally uniting to form the secondary palate
HP:0009804Reduced number of teethMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0003416Spinal canal stenosisMP:0010884esophagus stenosisabnormal narrowing or constriction of the esophagus
HP:0001252Muscular hypotoniaMP:0004144hypotoniadecreased muscle tension resulting in limpness of the muscles in the resting state, not to be confused with weakness
HP:0003312Abnormal form of the vertebral bodiesMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0011800Hypoplasia of midfaceMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000175Cleft palateMP:0013550abnormal secondary palate morphology
HP:0000407Sensorineural hearing impairmentMP:0006330syndromic hearing impairmenthearing impairment that is usually associated with malformations of the external ear and other inherited signs and symptoms
HP:0001634Mitral valve prolapseMP:0010617thick mitral valve cuspsan increase in the ratio of the mitral valve cusp wall thickness to the atrioventricular septum thickness
HP:0004349Reduced bone mineral densityMP:0013630increased bone trabecular spacingincrease in the amount of space between trabeculae in cancellous bone
HP:0000327Hypoplasia of the maxillaMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000682Abnormality of dental enamelMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0000389Chronic otitis mediaMP:0001850increased susceptibility to otitis mediagreater likelihood of middle ear inflammation, with an accumulation of a thick, mucous-like fluid; usually associated with a viral or bacterial respiratory infection
HP:0003202Skeletal muscle atrophyMP:0014068abnormal muscle glycogen levelthe normal concentration of a readily converted carbohydrate reserve in muscle tissue
HP:0000204Cleft upper lipMP:0005170cleft upper lipdefect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences
HP:0002205Recurrent respiratory infectionsMP:0014182decreased respiratory epithelial sodium ion transmembrane transportdecrease in the directed movement of sodium ions from one side of the respiratory epithelial cell membrane to the other
HP:0006288Advanced eruption of teethMP:0009536abnormal interstitial cell of Cajal morphologyany structural anomaly in the type of cell found in the gastrointestinal tract and serving as a pacemaker that triggers gut contraction; ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which
Mapped by homologous gene(Total Items:67)
HP ID HP Name MP ID MP Name Annotation
HP:0001252Muscular hypotoniaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000327Hypoplasia of the maxillaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002650ScoliosisMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0002653Bone painMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0005930Abnormality of epiphysis morphologyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0011675ArrhythmiaMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0002758OsteoarthritisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001634Mitral valve prolapseMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000486StrabismusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0002205Recurrent respiratory infectionsMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000463Anteverted naresMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0006288Advanced eruption of teethMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0003202Skeletal muscle atrophyMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0003179Protrusio acetabuliMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0003196Short noseMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0004322Short statureMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000682Abnormality of dental enamelMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000506TelecanthusMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0000347MicrognathiaMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0004374Hemiplegia/hemiparesisMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0004326CachexiaMP:0013659abnormal erythroid lineage cell morphologyany structural anomaly of an immature or mature cell in the lineage leading to and including erythrocytes
HP:0000501GlaucomaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000940Abnormal diaphysis morphologyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000316HypertelorismMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000618BlindnessMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000407Sensorineural hearing impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0004327Abnormality of the vitreous humorMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000518CataractMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000204Cleft upper lipMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002827Hip dislocationMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000541Retinal detachmentMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000158MacroglossiaMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0005280Depressed nasal bridgeMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002857Genu valgumMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0009804Reduced number of teethMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001373Joint dislocationMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000457Depressed nasal ridgeMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000483AstigmatismMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0000768Pectus carinatumMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002829ArthralgiaMP:0020154impaired humoral immune responseimpaired response of the immune system that mediates secreted antibodies produced in B cells
HP:0000554UveitisMP:0013501increased fibroblast apoptosisincrease in the timing or the number of fibroblast cells undergoing programmed cell death
HP:0000520ProptosisMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000175Cleft palateMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000162GlossoptosisMP:0013292embryonic lethality prior to organogenesisdeath prior to the completion of embryo turning (Mus: E9-9.5)
HP:0000365Hearing impairmentMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0010807Open biteMP:0013696increased granulocyte monocyte progenitor cell numberincrease in the number of a hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages; these cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1
HP:0008872Feeding difficulties in infancyMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0002020Gastroesophageal refluxMP:0014178increased brain apoptosisincrease in the number of cells of the brain undergoing programmed cell death
HP:0000286EpicanthusMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002652Skeletal dysplasiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0003312Abnormal form of the vertebral bodiesMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001533Slender buildMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010290Short hard palateMP:0013956decreased colon lengthreduced length of the portion of the large intestine between the cecum and the rectum
HP:0001166ArachnodactylyMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000343Long philtrumMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000272Malar flatteningMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000545MyopiaMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000926PlatyspondylyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0003416Spinal canal stenosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000389Chronic otitis mediaMP:0014185cerebellum atrophyacquired diminution of the size of the cerebellum associated with wasting as from death and reabsorption of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal
HP:0011800Hypoplasia of midfaceMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0005692Joint hyperflexibilityMP:0012125decreased bronchoconstrictive responsereduction in the expected bronchoconstrictive response to provocation challenge with lipopolysaccharide, bradykinin, histamine or other antigen/allergen or agent, often measured by plethysmography
HP:0004349Reduced bone mineral densityMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002808KyphosisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000505Visual impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001083Ectopia lentisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001519Disproportionate tall statureMP:0014179abnormal blood-retinal barrier functionanomaly in the function of the part of the blood-ocular barrier that consists of cells that are joined tightly together to prevent certain substances from entering the tissue of the retina; the BRB consists of non-fenestrated capillaries of the retinal ci
Disease ID 953
Disease stickler syndrome
Case(Waiting for update.)